HL_6T4Q_067

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_067 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.0905

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6T4Q|1|C1|U|2724
6T4Q|1|C1|U|2725
6T4Q|1|C1|C|2726
6T4Q|1|C1|A|2727
6T4Q|1|C1|G|2728
6T4Q|1|C1|U|2729
6T4Q|1|C1|G|2730
6T4Q|1|C1|U|2731
6T4Q|1|C1|G|2732

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18-A

Chain LT

60S ribosomal protein L21-A

Chain La

60S ribosomal protein L28

Chain Lo

60S ribosomal protein L42-A