HL_6T4Q_071

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6T4Q|1|C1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_071 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.076

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6T4Q|1|C1|A|2897
6T4Q|1|C1|G|2898
6T4Q|1|C1|C|2899
6T4Q|1|C1|A|2900
6T4Q|1|C1|G|2901
6T4Q|1|C1|A|2902
6T4Q|1|C1|A|2903
6T4Q|1|C1|U|2904

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain Lm

Ubiquitin-60S ribosomal protein L40