HL_6T4Q_084

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6T4Q|1|C2|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_084 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.372

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6T4Q|1|C2|C|190
6T4Q|1|C2|C|191
6T4Q|1|C2|U|192
6T4Q|1|C2|U|193
6T4Q|1|C2|U|194
6T4Q|1|C2|G|195

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A