HL_6T59_007

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6T59|1|54|G|134, 6T59|1|54|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_007 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3051

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6T59|1|54|C|131
6T59|1|54|G|132
6T59|1|54|C|133
6T59|1|54|G|134
6T59|1|54|G|135
6T59|1|54|C|136
6T59|1|54|G|137

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 84

5.8S ribosomal RNA; 5.8S rRNA

Chain N3

Ribosomal protein L15

Chain h3

uL29

Chain j3

Ribosomal protein L37