6T59 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6T59_001 | No text annotation | ||
| HL_6T59_090 | No text annotation | ||
| HL_6T59_002 | tRNA anticodon loop | ||
| HL_6T59_003 | T-loop with 2 stacked bulged bases | ||
| HL_6T59_004 | No text annotation | ||
| HL_6T59_005 | No text annotation | ||
| HL_6T59_006 | No text annotation | ||
| HL_6T59_007 | No text annotation | ||
| HL_6T59_091 | No text annotation | ||
| HL_6T59_008 | T-loop with 2 stacked bulged bases | ||
| HL_6T59_009 | No text annotation | ||
| HL_6T59_010 | T-loop with unstacked turn | ||
| HL_6T59_011 | No text annotation | ||
| HL_6T59_012 | Pseudoknot geometry | ||
| HL_6T59_013 | GNRA | ||
| HL_6T59_014 | GNRA | ||
| HL_6T59_015 | No text annotation | ||
| HL_6T59_016 | No text annotation | ||
| HL_6T59_017 | No text annotation | ||
| HL_6T59_018 | No text annotation | ||
| HL_6T59_019 | No text annotation | ||
| HL_6T59_020 | T-loop with 2 stacked bulged bases | ||
| HL_6T59_021 | No text annotation | ||
| HL_6T59_084 | No text annotation | ||
| HL_6T59_022 | GNRA | ||
| HL_6T59_023 | No text annotation | ||
| HL_6T59_024 | Pseudoknot geometry | ||
| HL_6T59_025 | No text annotation | ||
| HL_6T59_026 | GNRA | ||
| HL_6T59_027 | No text annotation | ||
| HL_6T59_028 | No text annotation | ||
| HL_6T59_029 | Externally structured | ||
| HL_6T59_085 | No text annotation | ||
| HL_6T59_030 | GNRA | ||
| HL_6T59_031 | No text annotation | ||
| HL_6T59_032 | GNRA | ||
| HL_6T59_033 | No text annotation | ||
| HL_6T59_034 | No text annotation | ||
| HL_6T59_035 | No text annotation | ||
| HL_6T59_036 | GNRA | ||
| HL_6T59_037 | T-loop with 2 stacked bulged bases | ||
| HL_6T59_038 | Pseudoknot geometry with 3' bulge | ||
| HL_6T59_039 | GNRA variation | ||
| HL_6T59_040 | No text annotation | ||
| HL_6T59_041 | No text annotation | ||
| HL_6T59_042 | GNRA | ||
| HL_6T59_043 | GNRA | ||
| HL_6T59_044 | No text annotation | ||
| HL_6T59_045 | No text annotation | ||
| HL_6T59_086 | No text annotation | ||
| HL_6T59_046 | No text annotation | ||
| HL_6T59_047 | No text annotation | ||
| HL_6T59_048 | No text annotation | ||
| HL_6T59_049 | GNRA | ||
| HL_6T59_050 | UNCG | ||
| HL_6T59_051 | No text annotation | ||
| HL_6T59_052 | No text annotation | ||
| HL_6T59_053 | No text annotation | ||
| HL_6T59_054 | GNRA | ||
| HL_6T59_055 | GNRA | ||
| HL_6T59_056 | No text annotation | ||
| HL_6T59_087 | No text annotation | ||
| HL_6T59_057 | No text annotation | ||
| HL_6T59_058 | No text annotation | ||
| HL_6T59_088 | No text annotation | ||
| HL_6T59_059 | No text annotation | ||
| HL_6T59_060 | No text annotation | ||
| HL_6T59_061 | No text annotation | ||
| HL_6T59_062 | No text annotation | ||
| HL_6T59_063 | Pseudoknot geometry | ||
| HL_6T59_064 | No text annotation | ||
| HL_6T59_065 | GNRA | ||
| HL_6T59_066 | No text annotation | ||
| HL_6T59_067 | No text annotation | ||
| HL_6T59_068 | No text annotation | ||
| HL_6T59_069 | No text annotation | ||
| HL_6T59_070 | GNRA | ||
| HL_6T59_071 | GNRA | ||
| HL_6T59_072 | Ribsomal LSU H95 | ||
| HL_6T59_073 | No text annotation | ||
| HL_6T59_074 | No text annotation | ||
| HL_6T59_075 | No text annotation | ||
| HL_6T59_076 | No text annotation | ||
| HL_6T59_077 | No text annotation | ||
| HL_6T59_089 | No text annotation | ||
| HL_6T59_078 | No text annotation | ||
| HL_6T59_079 | GNRA | ||
| HL_6T59_080 | Pseudoknot with intercalation | ||
| HL_6T59_081 | No text annotation | ||
| HL_6T59_082 | No text annotation | ||
| HL_6T59_083 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6T59_001 | No text annotation | ||
| IL_6T59_002 | Single bulged C | ||
| IL_6T59_003 | Single bulged U | ||
| IL_6T59_004 | No text annotation | ||
| IL_6T59_005 | No text annotation | ||
| IL_6T59_006 | No text annotation | ||
| IL_6T59_007 | No text annotation | ||
| IL_6T59_008 | No text annotation | ||
| IL_6T59_162 | Stack outside cWW | ||
| IL_6T59_163 | No text annotation | ||
| IL_6T59_009 | No text annotation | ||
| IL_6T59_010 | Single bulged C | ||
| IL_6T59_011 | No text annotation | ||
| IL_6T59_012 | No text annotation | ||
| IL_6T59_013 | Single bulged C | ||
| IL_6T59_014 | Single bulged U | ||
| IL_6T59_015 | Minor groove platform | ||
| IL_6T59_016 | Single bulged A | ||
| IL_6T59_017 | No text annotation | ||
| IL_6T59_018 | Triple sheared with non-canonical cWW | ||
| IL_6T59_019 | No text annotation | ||
| IL_6T59_020 | No text annotation | ||
| IL_6T59_021 | Single bulged C | ||
| IL_6T59_022 | Tandem non-canonical cWW pairs | ||
| IL_6T59_173 | Isolated non-canonical cWW pair | ||
| IL_6T59_023 | No text annotation | ||
| IL_6T59_024 | Single bulged C | ||
| IL_6T59_025 | Multiple bulged bases | ||
| IL_6T59_026 | Multiple bulged bases | ||
| IL_6T59_027 | No text annotation | ||
| IL_6T59_028 | No text annotation | ||
| IL_6T59_029 | Single bulged A | ||
| IL_6T59_030 | Single bulged G | ||
| IL_6T59_031 | Multiple bulged bases | ||
| IL_6T59_032 | No text annotation | ||
| IL_6T59_033 | No text annotation | ||
| IL_6T59_034 | No text annotation | ||
| IL_6T59_035 | No text annotation | ||
| IL_6T59_036 | Isolated non-canonical cWW contact | ||
| IL_6T59_037 | No text annotation | ||
| IL_6T59_038 | Isolated near basepair | ||
| IL_6T59_039 | Single bulged C | ||
| IL_6T59_164 | No text annotation | ||
| IL_6T59_040 | No text annotation | ||
| IL_6T59_041 | Isolated cWH basepair | ||
| IL_6T59_042 | No text annotation | ||
| IL_6T59_165 | No text annotation | ||
| IL_6T59_043 | Major groove intercalation | ||
| IL_6T59_044 | Triple sheared related | ||
| IL_6T59_045 | Double sheared | ||
| IL_6T59_046 | Single bulged A | ||
| IL_6T59_047 | Single stack bend | ||
| IL_6T59_048 | Isolated non-canonical cWW pair | ||
| IL_6T59_049 | tHW-tHW cross-strand stack | ||
| IL_6T59_050 | Single bulged G | ||
| IL_6T59_051 | Triple sheared | ||
| IL_6T59_052 | Major groove platform with extra cWW | ||
| IL_6T59_053 | Single bulged U | ||
| IL_6T59_054 | No text annotation | ||
| IL_6T59_055 | Isolated non-canonical cWW pair | ||
| IL_6T59_056 | No text annotation | ||
| IL_6T59_057 | No text annotation | ||
| IL_6T59_058 | Single bulged G | ||
| IL_6T59_059 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6T59_060 | Minor groove platform | ||
| IL_6T59_061 | C-loop | ||
| IL_6T59_062 | No text annotation | ||
| IL_6T59_166 | No text annotation | ||
| IL_6T59_063 | Isolated non-canonical cWW pair | ||
| IL_6T59_064 | No text annotation | ||
| IL_6T59_065 | Tandem non-canonical cWW pairs | ||
| IL_6T59_066 | Single bulged G | ||
| IL_6T59_067 | Isolated non-canonical cWW pair | ||
| IL_6T59_068 | No text annotation | ||
| IL_6T59_069 | UAA/GAN | ||
| IL_6T59_070 | SSU/LSU pseudoknot | ||
| IL_6T59_071 | No text annotation | ||
| IL_6T59_072 | No text annotation | ||
| IL_6T59_073 | No text annotation | ||
| IL_6T59_074 | No text annotation | ||
| IL_6T59_075 | Single bulged U | ||
| IL_6T59_167 | No text annotation | ||
| IL_6T59_076 | Single bulged U | ||
| IL_6T59_077 | Isolated cWS basepair | ||
| IL_6T59_078 | Single bulged A | ||
| IL_6T59_079 | Kink-turn | ||
| IL_6T59_080 | Single bulged A | ||
| IL_6T59_081 | No text annotation | ||
| IL_6T59_082 | C-loop | ||
| IL_6T59_083 | UAA/GAN | ||
| IL_6T59_084 | Not an internal loop | ||
| IL_6T59_085 | Isolated non-canonical cWW pair | ||
| IL_6T59_086 | Single bulged U | ||
| IL_6T59_087 | Triple sheared | ||
| IL_6T59_088 | Single bulged A | ||
| IL_6T59_089 | Single stack bend | ||
| IL_6T59_090 | Isolated tHS basepair with bulges | ||
| IL_6T59_091 | Single bulged G | ||
| IL_6T59_092 | Kink-turn | ||
| IL_6T59_093 | No text annotation | ||
| IL_6T59_094 | No text annotation | ||
| IL_6T59_095 | No text annotation | ||
| IL_6T59_096 | Major groove platform; stack outside cWW | ||
| IL_6T59_168 | No text annotation | ||
| IL_6T59_097 | Intercalated tWH | ||
| IL_6T59_098 | No text annotation | ||
| IL_6T59_099 | Isolated non-canonical cWW pair | ||
| IL_6T59_100 | No text annotation | ||
| IL_6T59_101 | Single bulged A | ||
| IL_6T59_102 | Kink-turn related | ||
| IL_6T59_103 | Major groove intercalation | ||
| IL_6T59_104 | Multiple bulged bases | ||
| IL_6T59_105 | Single stack bend | ||
| IL_6T59_106 | No text annotation | ||
| IL_6T59_107 | No text annotation | ||
| IL_6T59_108 | Bulged stacked bases | ||
| IL_6T59_109 | No text annotation | ||
| IL_6T59_110 | Major groove platform with extra pair | ||
| IL_6T59_111 | No text annotation | ||
| IL_6T59_112 | Single bulged U | ||
| IL_6T59_113 | Minor groove platform | ||
| IL_6T59_114 | No text annotation | ||
| IL_6T59_115 | No text annotation | ||
| IL_6T59_116 | Single bulged A | ||
| IL_6T59_117 | Isolated tHS basepair with bulges | ||
| IL_6T59_118 | Single bulged A | ||
| IL_6T59_119 | Tandem non-canonical cWW pairs | ||
| IL_6T59_120 | No text annotation | ||
| IL_6T59_174 | Single stack bend | ||
| IL_6T59_121 | Major groove platform | ||
| IL_6T59_122 | Isolated non-canonical cWW pair | ||
| IL_6T59_123 | Major groove platform | ||
| IL_6T59_124 | Major groove minor groove platform with extra cWW | ||
| IL_6T59_125 | No text annotation | ||
| IL_6T59_126 | Major groove platform | ||
| IL_6T59_127 | Isolated non-canonical cWW with bulges | ||
| IL_6T59_128 | Multiple bulged bases | ||
| IL_6T59_129 | Isolated non-canonical cWW pair | ||
| IL_6T59_169 | No text annotation | ||
| IL_6T59_130 | No text annotation | ||
| IL_6T59_131 | Isolated non-canonical cWW pair | ||
| IL_6T59_132 | Single bulged A | ||
| IL_6T59_133 | Isolated cWH basepair | ||
| IL_6T59_134 | Double sheared | ||
| IL_6T59_135 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6T59_136 | No text annotation | ||
| IL_6T59_137 | UAA/GAN related | ||
| IL_6T59_138 | Isolated cWH basepair | ||
| IL_6T59_139 | Multiple bulged bases | ||
| IL_6T59_140 | UAA/GAN with extra cWW | ||
| IL_6T59_141 | No text annotation | ||
| IL_6T59_142 | No text annotation | ||
| IL_6T59_143 | No text annotation | ||
| IL_6T59_170 | No text annotation | ||
| IL_6T59_144 | Tandem non-canonical cWW pairs | ||
| IL_6T59_145 | No text annotation | ||
| IL_6T59_175 | No text annotation | ||
| IL_6T59_171 | No text annotation | ||
| IL_6T59_146 | No text annotation | ||
| IL_6T59_147 | Tandem non-canonical cWW pairs | ||
| IL_6T59_148 | Isolated non-canonical cWW pair | ||
| IL_6T59_149 | Single bulged C | ||
| IL_6T59_150 | Isolated non-canonical cWW pair | ||
| IL_6T59_151 | No text annotation | ||
| IL_6T59_152 | Single bulged C | ||
| IL_6T59_153 | Double sheared; A in syn | ||
| IL_6T59_154 | Single bulged A | ||
| IL_6T59_155 | Minor groove platform related | ||
| IL_6T59_172 | No text annotation | ||
| IL_6T59_156 | Major groove minor groove platform with extra cWW | ||
| IL_6T59_176 | No text annotation | ||
| IL_6T59_157 | Symmetric double minor groove platform | ||
| IL_6T59_158 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6T59_159 | Isolated non-canonical cWW pair | ||
| IL_6T59_160 | Isolated non-canonical cWW pair | ||
| IL_6T59_177 | Isolated non-canonical cWW with bulges | ||
| IL_6T59_161 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6T59_001 | No text annotation | ||
| J3_6T59_018 | No text annotation | ||
| J3_6T59_019 | No text annotation | ||
| J3_6T59_002 | No text annotation | ||
| J3_6T59_020 | No text annotation | ||
| J3_6T59_021 | No text annotation | ||
| J3_6T59_003 | No text annotation | ||
| J3_6T59_004 | No text annotation | ||
| J3_6T59_005 | No text annotation | ||
| J3_6T59_006 | No text annotation | ||
| J3_6T59_007 | No text annotation | ||
| J3_6T59_008 | No text annotation | ||
| J3_6T59_009 | No text annotation | ||
| J3_6T59_022 | No text annotation | ||
| J3_6T59_010 | No text annotation | ||
| J3_6T59_011 | No text annotation | ||
| J3_6T59_023 | No text annotation | ||
| J3_6T59_012 | No text annotation | ||
| J3_6T59_024 | No text annotation | ||
| J3_6T59_025 | No text annotation | ||
| J3_6T59_013 | No text annotation | ||
| J3_6T59_026 | No text annotation | ||
| J3_6T59_014 | No text annotation | ||
| J3_6T59_027 | No text annotation | ||
| J3_6T59_028 | No text annotation | ||
| J3_6T59_015 | No text annotation | ||
| J3_6T59_016 | No text annotation | ||
| J3_6T59_017 | No text annotation | ||
| J4_6T59_001 | tRNA junction | ||
| J4_6T59_002 | No text annotation | ||
| J4_6T59_003 | No text annotation | ||
| J4_6T59_004 | No text annotation | ||
| J4_6T59_005 | No text annotation | ||
| J4_6T59_006 | No text annotation | ||
| J4_6T59_007 | No text annotation | ||
| J4_6T59_008 | No text annotation | ||
| J4_6T59_009 | No text annotation | ||
| J4_6T59_010 | No text annotation | ||
| J4_6T59_011 | No text annotation | ||
| J5_6T59_001 | No text annotation | ||
| J5_6T59_007 | No text annotation | ||
| J5_6T59_002 | No text annotation | ||
| J5_6T59_003 | No text annotation | ||
| J5_6T59_004 | No text annotation | ||
| J5_6T59_005 | No text annotation | ||
| J5_6T59_006 | No text annotation | ||
| J6_6T59_001 | No text annotation | ||
| J6_6T59_002 | No text annotation | ||
| J7_6T59_001 | No text annotation |
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