RNA 3D Hub //

6T59 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6T59_0901/23/12:23No text annotation
HL_6T59_0021/23/31:39tRNA anticodon loop
homologous
HL_4V9Q_214
HL_06059.7
HL_6T59_0031/23/53:61T-loop with 2 stacked bulged bases
homologous
HL_5WWT_002
HL_28252.9
HL_6T59_0041/54/37:44No text annotation
geometric
HL_5TBW_001
NA
HL_6T59_0051/54/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_6T59_0061/54/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_6T59_0911/54/132:136No text annotation
HL_6T59_0081/54/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_6T59_0091/54/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_6T59_0101/54/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_6T59_0111/54/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_6T59_0121/54/314:323Pseudoknot geometry
geometric
HL_4QLM_002
HL_77600.2
HL_6T59_0131/54/368:373GNRA
homologous
HL_8C3A_010
NA
HL_6T59_0141/54/393:398GNRA
homologous
HL_8C3A_011
NA
HL_6T59_0151/54/520:641No text annotation
HL_6T59_0161/54/759:904No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_6T59_0171/54/962:970No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_6T59_0181/54/989:1065No text annotation
HL_6T59_0191/54/1178:1183No text annotation
HL_6T59_0201/54/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_6T59_0841/54/1364:1373No text annotation
HL_6T59_0221/54/1389:1394GNRA
homologous
HL_5TBW_016
NA
HL_6T59_0231/54/1406B:1411ANo text annotation
HL_6T59_0241/54/1436:1448Pseudoknot geometry
geometric
HL_4ENC_001
HL_77600.2
HL_6T59_0251/54/1479:1486No text annotation
HL_6T59_0261/54/1561:1566GNRA
homologous
HL_5TBW_019
NA
HL_6T59_0271/54/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_6T59_0281/54/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_6T59_0291/54/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_6T59_0851/54/1760:1772No text annotation
HL_6T59_0301/54/1763:1769GNRA
homologous
HL_5TBW_023
NA
HL_6T59_0311/54/1816:1823No text annotation
homologous
HL_5TBW_024
NA
HL_6T59_0321/54/1864:1870GNRA
homologous
HL_8C3A_025
NA
HL_6T59_0331/54/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_6T59_0341/54/1972:1994No text annotation
HL_6T59_0351/54/2087:2270No text annotation
HL_6T59_0361/54/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_6T59_0371/54/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6T59_0381/54/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_6T59_0391/54/2458:2463GNRA variation
homologous
HL_5TBW_033
NA
HL_6T59_0401/54/2487:2491No text annotation
HL_6T59_0411/54/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_6T59_0421/54/2561:2566GNRA
geometric
HL_4NLF_001
HL_37824.8
HL_6T59_0431/54/2578:2583GNRA
homologous
HL_5TBW_036
NA
HL_6T59_0441/54/2624:2632No text annotation
homologous
HL_5TBW_037
NA
HL_6T59_0451/54/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_6T59_0861/54/2704:2712No text annotation
HL_6T59_0461/54/2705:2710No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_6T59_0471/54/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_6T59_0481/54/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_6T59_0491/54/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_6T59_0501/54/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_6T59_0511/54/2901:3598No text annotation
HL_6T59_0521/54/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_6T59_0531/54/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_6T59_0541/54/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_6T59_0551/54/3724:3729GNRA
homologous
HL_5TBW_048
NA
HL_6T59_0871/54/3757:3767No text annotation
homologous
HL_8C3A_049
NA
HL_6T59_0571/54/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_6T59_0581/54/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_6T59_0881/54/3944:4069No text annotation
HL_6T59_0591/54/4100:4108No text annotation
HL_6T59_0601/54/4193:4201No text annotation
homologous
HL_5TBW_054
NA
HL_6T59_0611/54/4210:4222No text annotation
homologous
HL_5TBW_055
NA
HL_6T59_0621/54/4250:4258No text annotation
homologous
HL_5TBW_056
NA
HL_6T59_0631/54/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_6T59_0641/54/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_6T59_0651/54/4321:4326GNRA
homologous
HL_5TBW_059
NA
HL_6T59_0661/54/4352:4362No text annotation
geometric
HL_4V83_139
NA
HL_6T59_0671/54/4417:4425No text annotation
homologous
HL_5TBW_061
NA
HL_6T59_0681/54/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_6T59_0691/54/4497:4503No text annotation
geometric
HL_5TBW_063
NA
HL_6T59_0701/54/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_6T59_0711/54/4603:4608GNRA
homologous
HL_5TBW_065
NA
HL_6T59_0721/54/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6T59_0731/54/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_6T59_0741/54/4775:4860No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_6T59_0751/54/4906:4915No text annotation
geometric
HL_7RQB_011
NA
HL_6T59_0761/54/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_6T59_0771/54/5021:5028No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_6T59_0891/74/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_6T59_0781/74/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_6T59_0791/74/86:91GNRA
homologous
HL_5TBW_186
NA
HL_6T59_0801/84/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_6T59_0821/84/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_6T59_0831/84/121:129No text annotation

Problematic loops

#loop idProblemSequence
HL_6T59_001No text annotation
HL_6T59_007No text annotation
HL_6T59_021No text annotation
HL_6T59_056No text annotation
HL_6T59_081No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6T59_0011/23/2:4,
1/23/69:71		No text annotation
homologous
IL_5EL4_357
NA
IL_6T59_0021/54/6:7,
1/84/149:151		Single bulged C
geometric
IL_7RQB_035
NA
IL_6T59_0031/54/12:14,
1/84/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_6T59_0041/54/16:18,
1/84/139:141		No text annotation
geometric
IL_3ICQ_003
NA
IL_6T59_0051/54/26:27,
1/54/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_6T59_0061/54/30:37,
1/54/44:52		No text annotation
homologous
IL_8C3A_005
NA
IL_6T59_0071/54/81:88,
1/54/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_6T59_1621/54/118:121,
1/54/152:153		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_6T59_1631/54/118:122,
1/54/147:153		No text annotation
IL_6T59_0091/54/121:122,
1/54/147:152		No text annotation
homologous
IL_5TBW_007
NA
IL_6T59_0101/54/125:126,
1/54/142:144		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_6T59_0111/54/168:173,
1/54/263:267		No text annotation
IL_6T59_0121/54/180:189,
1/54/252:256		No text annotation
IL_6T59_0131/54/195:196,
1/54/244:246		Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_6T59_0141/54/199:201,
1/54/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_6T59_0151/54/339:342,
1/84/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_6T59_0161/54/348:350,
1/84/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_6T59_0171/54/387:390,
1/54/401:414		No text annotation
homologous
IL_5TBW_014
NA
IL_6T59_0181/54/415:421,
1/84/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6T59_0191/54/443:446,
1/54/1300:1304		No text annotation
geometric
IL_4PHY_003
IL_99358.1
IL_6T59_0201/54/448:450,
1/54/1297:1298		No text annotation
IL_6T59_0211/54/459:460,
1/54/695:697		Single bulged C
geometric
IL_1S03_002
IL_61258.15
IL_6T59_1731/54/462:464,
1/54/691:693		Isolated non-canonical cWW pair
geometric
IL_8P9A_456
IL_87907.2
IL_6T59_0231/54/466:472,
1/54/682:689		No text annotation
IL_6T59_0241/54/481:482,
1/54/672:673		Single bulged C
geometric
IL_7KGA_004
IL_61258.15
IL_6T59_0251/54/482:485,
1/54/671:672		Multiple bulged bases
geometric
IL_6JXM_001
IL_84476.1
IL_6T59_0261/54/487:488,
1/54/665:669		Multiple bulged bases
geometric
IL_1R3E_002
IL_84476.1
IL_6T59_0271/54/491:493,
1/54/661:662		No text annotation
IL_6T59_0281/54/497:499,
1/54/656:657		No text annotation
IL_6T59_0291/54/508:510,
1/54/649:650		Single bulged A
geometric
IL_6WPI_001
IL_31462.7
IL_6T59_0301/54/709:710,
1/54/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_6T59_0311/54/723:724,
1/54/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6T59_0321/54/727:731,
1/54/938:939		No text annotation
IL_6T59_0331/54/732:735,
1/54/928:937		No text annotation
IL_6T59_0341/54/737:739,
1/54/923:926		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_6T59_0351/54/745:752,
1/54/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_6T59_0361/54/1074:1076,
1/54/1234:1236		Isolated non-canonical cWW contact
geometric
IL_4V88_395
NA
IL_6T59_0371/54/1077:1080,
1/54/1219:1233		No text annotation
IL_6T59_0381/54/1082:1084,
1/54/1213:1217		Isolated near basepair
geometric
IL_7A0S_030
IL_42997.3
IL_6T59_0391/54/1086:1087,
1/54/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_6T59_1641/54/1097:1168,
1/54/1193:1199		No text annotation
IL_6T59_0411/54/1173:1175,
1/54/1186:1188		Isolated cWH basepair
geometric
IL_5J7L_011
IL_10167.6
IL_6T59_0421/54/1357:1360,
1/54/1379:1382		No text annotation
IL_6T59_1651/54/1357:1361,
1/54/1376:1382		No text annotation
IL_6T59_0431/54/1360:1361,
1/54/1376:1379		Major groove intercalation
geometric
IL_1NBS_009
IL_82107.5
IL_6T59_0441/54/1425:1429,
1/54/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_6T59_0451/54/1431:1434,
1/54/1450:1453		Double sheared
geometric
IL_4KZD_002
IL_09705.15
IL_6T59_0461/54/1467:1468,
1/54/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_6T59_0471/54/1474:1476,
1/54/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_6T59_0481/54/1520:1522,
1/54/1655:1657		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_6T59_0491/54/1522:1526,
1/54/1648:1655		tHW-tHW cross-strand stack
homologous
IL_5TBW_028
NA
IL_6T59_0501/54/1550:1551,
1/54/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_6T59_0511/54/1551:1555,
1/54/1572:1576		Triple sheared
geometric
IL_4V9F_027
IL_50730.2
IL_6T59_0521/54/1586:1589,
1/54/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6T59_0531/54/1590:1592,
1/54/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_6T59_0541/54/1624:1626,
1/54/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_6T59_0551/54/1671:1673,
1/54/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6T59_0561/54/1686:1688,
1/54/1848:1851		No text annotation
IL_6T59_0571/54/1694:1721,
1/54/1841:1842		No text annotation
IL_6T59_0581/54/1723:1725,
1/54/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_6T59_0591/54/1732:1737,
1/54/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_6T59_0601/54/1737:1738,
1/54/1790:1792		Minor groove platform
geometric
IL_5TBW_039
NA
IL_6T59_0611/54/1739:1744,
1/54/1786:1789		C-loop
homologous
IL_5TBW_040
NA
IL_6T59_1661/54/1746:1749,
1/54/1781:1784		No text annotation
homologous
IL_8C3A_481
NA
IL_6T59_0631/54/1749:1751,
1/54/1779:1781		Isolated non-canonical cWW pair
homologous
IL_5TBW_042
NA
IL_6T59_0641/54/1753:1756,
1/54/1776:1777		No text annotation
IL_6T59_0651/54/1760:1763,
1/54/1769:1772		Tandem non-canonical cWW pairs
geometric
IL_1D4R_003
IL_85033.2
IL_6T59_0661/54/1814:1816,
1/54/1823:1824		Single bulged G
geometric
IL_4V88_442
NA
IL_6T59_0671/54/1858:1860,
1/54/1874:1876		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_6T59_0691/54/1905:1909,
1/54/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_6T59_0701/54/1911:1918,
1/54/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_6T59_0711/54/1918:1920,
1/54/2063:2064		No text annotation
IL_6T59_0721/54/1920:1922,
1/54/2062:2063		No text annotation
IL_6T59_0731/54/1926:1933,
1/54/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_6T59_0741/54/1933:1944,
1/54/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_6T59_0751/54/1946:1948,
1/54/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_6T59_1671/54/1957:1972,
1/54/1994:2026		No text annotation
IL_6T59_0761/54/2083:2085,
1/54/2272:2273		Single bulged U
geometric
IL_6CZR_156
NA
IL_6T59_0771/54/2290:2292,
1/54/2342:2345		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_6T59_0781/54/2299:2301,
1/54/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_6T59_0791/54/2302:2309,
1/54/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_6T59_0801/54/2312:2314,
1/54/2325:2326		Single bulged A
homologous
IL_5TBW_060
NA
IL_6T59_0811/54/2358:2364,
1/54/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_6T59_0821/54/2415:2419,
1/54/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_6T59_0831/54/2446:2450,
1/54/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6T59_0841/54/2477:2479,
1/54/2499:2500		Not an internal loop
geometric
IL_4UYK_002
NA
IL_6T59_0851/54/2542:2547,
1/54/2772:2774		Isolated non-canonical cWW pair
geometric
IL_4WF9_041
IL_57744.1
IL_6T59_0861/54/2549:2550,
1/54/2768:2770		Single bulged U
geometric
IL_2A64_002
IL_89505.4
IL_6T59_0871/54/2589:2593,
1/54/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_6T59_0881/54/2613:2614,
1/54/2724:2726		Single bulged A
geometric
IL_7A0S_012
IL_31462.7
IL_6T59_0891/54/2614:2615,
1/54/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_6T59_0901/54/2646:2648,
1/54/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_6T59_0911/54/2651:2653,
1/54/2681:2682		Single bulged G
geometric
IL_4WF9_023
IL_00225.14
IL_6T59_0921/54/2656:2662,
1/54/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_6T59_0931/54/2704:2705,
1/54/2710:2712		No text annotation
IL_6T59_0941/54/2832:2838,
1/54/3850:3853		No text annotation
homologous
IL_5TBW_074
NA
IL_6T59_0951/54/2844:2846,
1/54/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_6T59_0961/54/2847:2850,
1/54/3840:3841		Major groove platform; stack outside cWW
homologous
IL_5TBW_076
NA
IL_6T59_1681/54/2847:2855,
1/54/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_6T59_0971/54/2850:2855,
1/54/3837:3840		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_6T59_0981/54/2867:2872,
1/54/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_6T59_0991/54/2889:2891,
1/54/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_6T59_1001/54/2896:2897,
1/54/3602:3605		No text annotation
homologous
IL_5TBW_080
NA
IL_6T59_1011/54/3632:3633,
1/54/3827:3829		Single bulged A
homologous
IL_8C3A_087
NA
IL_6T59_1021/54/3660:3665,
1/54/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_6T59_1031/54/3700:3703,
1/54/3749:3750		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_6T59_1041/54/3704:3705,
1/54/3745:3748		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6T59_1051/54/3708:3710,
1/54/3741:3742		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_6T59_1061/54/3710:3714,
1/54/3739:3741		No text annotation
homologous
IL_8C3A_092
NA
IL_6T59_1071/54/3715:3721,
1/54/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_6T59_1081/54/3780:3781,
1/54/3811:3814		Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_6T59_1091/54/3781:3792,
1/54/3808:3811		No text annotation
geometric
IL_5TBW_090
NA
IL_6T59_1101/54/3895:3898,
1/54/4563:4565		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_6T59_1111/54/3900:3902,
1/54/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_6T59_1121/54/3913:3915,
1/54/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_6T59_1131/54/3916:3917,
1/54/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6T59_1141/54/3927:3929,
1/54/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_6T59_1151/54/4082:4088,
1/54/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_6T59_1161/54/4191:4192,
1/54/4202:4204		Single bulged A
homologous
IL_5TBW_098
NA
IL_6T59_1171/54/4243:4245,
1/54/4263:4267		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_6T59_1181/54/4291:4293,
1/54/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_6T59_1191/54/4295:4298,
1/54/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_6T59_1201/54/4346:4350,
1/54/4364:4366		No text annotation
geometric
IL_4P3T_002
NA
IL_6T59_1741/54/4347:4350,
1/54/4364:4365		Single stack bend
geometric
IL_8P9A_328
IL_90729.1
IL_6T59_1211/54/4400:4401,
1/54/4442:4444		Major groove platform
homologous
IL_5TBW_102
NA
IL_6T59_1221/54/4401:4403,
1/54/4440:4442		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_6T59_1231/54/4403:4405,
1/54/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_6T59_1241/54/4405:4407,
1/54/4435:4439		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_6T59_1251/54/4412:4416,
1/54/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_6T59_1261/54/4453:4454,
1/54/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_6T59_1271/54/4456:4458,
1/54/4520:4524		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_6T59_1281/54/4458:4459,
1/54/4517:4520		Multiple bulged bases
homologous
IL_5TBW_109
NA
IL_6T59_1291/54/4466:4468,
1/54/4489:4491		Isolated non-canonical cWW pair
homologous
IL_5TBW_110
NA
IL_6T59_1691/54/4466:4470,
1/54/4485:4491		No text annotation
IL_6T59_1301/54/4468:4470,
1/54/4485:4489		No text annotation
IL_6T59_1311/54/4495:4497,
1/54/4503:4505		Isolated non-canonical cWW pair
homologous
IL_5TBW_112
NA
IL_6T59_1321/54/4537:4538,
1/54/4547:4549		Single bulged A
geometric
IL_7RQB_101
NA
IL_6T59_1331/54/4580:4582,
1/54/4721:4723		Isolated cWH basepair
geometric
IL_4E5C_001
IL_10167.6
IL_6T59_1341/54/4582:4585,
1/54/4717:4721		Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_6T59_1351/54/4596:4603,
1/54/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6T59_1361/54/4624:4629,
1/54/4669:4673		No text annotation
IL_6T59_1371/54/4632:4637,
1/54/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6T59_1381/54/4638:4640,
1/54/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10167.6
IL_6T59_1391/54/4641:4642,
1/54/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6T59_1401/54/4680:4685,
1/54/4705:4710		UAA/GAN with extra cWW
geometric
IL_5J7L_350
IL_49767.8
IL_6T59_1411/54/4740:4746,
1/54/4954:4959		No text annotation
IL_6T59_1421/54/4756:4766,
1/54/4868:4877		No text annotation
homologous
IL_8P9A_352
IL_42231.1
IL_6T59_1431/54/4769:4773,
1/54/4862:4865		No text annotation
IL_6T59_1441/54/4885:4888,
1/54/4931:4934		Tandem non-canonical cWW pairs
geometric
IL_4K27_003
IL_77658.1
IL_6T59_1451/54/4890:4896,
1/54/4924:4929		No text annotation
IL_6T59_1751/54/4890:4902,
1/54/4919:4929		No text annotation
IL_6T59_1461/54/4897:4902,
1/54/4919:4923		No text annotation
IL_6T59_1471/54/4972:4975,
1/54/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_6T59_1481/54/4992:4994,
1/54/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3IVK_002
IL_87907.2
IL_6T59_1491/54/4996:4997,
1/54/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_61258.15
IL_6T59_1501/54/5000:5002,
1/54/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6T59_1511/54/5003:5009,
1/54/5039:5044		No text annotation
IL_6T59_1521/54/5012:5014,
1/54/5035:5036		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_6T59_1531/54/5014:5017,
1/54/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_6T59_1541/74/15:16,
1/74/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_6T59_1551/74/21:27,
1/74/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6T59_1761/74/28:29,
1/74/48:51		No text annotation
homologous
IL_9DFE_112
IL_68140.4
IL_6T59_1571/74/32:36,
1/74/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_6T59_1581/74/71:78,
1/74/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6T59_1591/74/79:81,
1/74/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_6T59_1601/74/82:85,
1/74/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_6T59_1771/84/64:66,
1/84/92:95		Isolated non-canonical cWW with bulges
homologous
IL_8P9A_371
IL_07785.1

Problematic loops

#loop idProblemSequence
IL_6T59_008No text annotation
IL_6T59_022Tandem non-canonical cWW pairs
IL_6T59_040No text annotation
IL_6T59_062No text annotation
IL_6T59_068No text annotation
IL_6T59_170No text annotation
IL_6T59_171No text annotation
IL_6T59_172No text annotation
IL_6T59_156Major groove minor groove platform with extra cWW
IL_6T59_161No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6T59_0011/54/112:116,
1/54/155:160,
1/54/275:278		No text annotation
J3_6T59_0181/54/196:199,
1/54/215:228,
1/54/240:244		No text annotation
J3_6T59_0191/54/351:367,
1/54/374:379,
1/84/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_6T59_0021/54/380:387,
1/54/414:415,
1/84/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_6T59_0201/54/380:390,
1/54/401:415,
1/84/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_6T59_0211/54/451:455,
1/54/701:705,
1/54/1292:1296		No text annotation
J3_6T59_0031/54/980:984,
1/54/1070:1074,
1/54/1236:1275		No text annotation
J3_6T59_0041/54/1531:1537,
1/54/1622:1624,
1/54/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_6T59_0051/54/1545:1548,
1/54/1580:1584,
1/54/1609:1614		No text annotation
homologous
J3_5TBW_005
NA
J3_6T59_0061/54/1726:1727,
1/54/1802:1806,
1/54/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_6T59_0071/54/2393:2399,
1/54/2805:2807,
1/54/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_6T59_0081/54/2402:2405,
1/54/2785:2791,
1/54/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_6T59_0091/54/2440:2445,
1/54/2515:2519,
1/54/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_6T59_0221/54/2451:2456,
1/54/2465:2476,
1/54/2501:2508		No text annotation
J3_6T59_0101/54/2551:2555,
1/54/2572:2575,
1/54/2757:2767		No text annotation
J3_6T59_0111/54/2575:2576,
1/54/2585:2589,
1/54/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_6T59_0231/54/2598:2602,
1/54/2737:2738,
1/54/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_6T59_0121/54/3937:3939,
1/54/4074:4078,
1/54/4168:4173		No text annotation
geometric
J3_7A0S_009
J3_89368.5
J3_6T59_0241/54/4091:4100,
1/54/4108:4129,
1/54/4155:4158		No text annotation
J3_6T59_0251/54/4228:4230,
1/54/4331:4342,
1/54/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_6T59_0131/54/4241:4243,
1/54/4267:4269,
1/54/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_6T59_0141/54/4463:4466,
1/54/4491:4493,
1/54/4507:4513		No text annotation
homologous
J3_5TBW_014
NA
J3_6T59_0271/54/4749:4754,
1/54/4879:4883,
1/54/4936:4951		No text annotation
J3_6T59_0281/54/4970:4972,
1/54/4986:4991,
1/54/5060:5063		No text annotation
J3_6T59_0161/74/9:14,
1/74/65:66,
1/74/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_6T59_0171/84/44:45,
1/84/58:64,
1/84/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_6T59_0011/23/7:10,
1/23/25:27,
1/23/43:49,
1/23/65:66		tRNA junction
homologous
J4_7EQJ_002
J4_70449.29
J4_6T59_0021/54/111:112,
1/54/278:283,
1/54/304:310,
1/54/327:330		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_6T59_0031/54/196:199,
1/54/215:222,
1/54/226:228,
1/54/240:244		No text annotation
J4_6T59_0041/54/2365:2371,
1/54/2389:2391,
1/54/2824:2829,
1/54/3856:3857		No text annotation
J4_6T59_0051/54/2406:2410,
1/54/2434:2439,
1/54/2538:2539,
1/54/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_6T59_0061/54/2618:2619,
1/54/2637:2642,
1/54/2692:2698,
1/54/2718:2719		No text annotation
J4_6T59_0071/54/3634:3638,
1/54/3650:3654,
1/54/3690:3694,
1/54/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_6T59_0081/54/3696:3698,
1/54/3752:3753,
1/54/3771:3780,
1/54/3814:3819		No text annotation
homologous
J4_8C3A_007
NA
J4_6T59_0091/54/4231:4235,
1/54/4289:4291,
1/54/4318:4319,
1/54/4328:4330		No text annotation
J4_6T59_0101/54/4231:4235,
1/54/4289:4293,
1/54/4317:4319,
1/54/4328:4330		No text annotation
homologous
J4_8C3A_008
NA
J4_6T59_0111/54/4587:4592,
1/54/4618:4621,
1/54/4676:4678,
1/54/4712:4715		No text annotation
J5_6T59_0071/54/20:21,
1/84/35:42,
1/84/101:106,
1/84/113:114,
1/84/136:137		No text annotation
J5_6T59_0021/54/712:713,
1/54/955:961,
1/54/971:984,
1/54/1070:1074,
1/54/1236:1284		No text annotation
J5_6T59_0031/54/1335:1340,
1/54/1516:1519,
1/54/1658:1661,
1/54/2288:2290,
1/54/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_63811.1
J5_6T59_0041/54/2855:2863,
1/54/2887:2888,
1/54/3613:3614,
1/54/3618:3626,
1/54/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_6T59_0051/54/3903:3910,
1/54/4392:4400,
1/54/4444:4453,
1/54/4528:4534,
1/54/4552:4557		No text annotation
J5_6T59_0061/54/3920:3923,
1/54/4188:4191,
1/54/4204:4205,
1/54/4227:4228,
1/54/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_6T59_0011/54/21:26,
1/54/57:67,
1/54/74:78,
1/54/105:109,
1/54/332:339,
1/84/33:35		No text annotation
J6_6T59_0021/54/1352:1355,
1/54/1384:1388,
1/54/1395:1399,
1/54/1418:1421,
1/54/1464:1466,
1/54/1499:1504		No text annotation
J7_6T59_0011/54/1666:1671,
1/54/1684:1685,
1/54/1852:1855,
1/54/1879:1884,
1/54/1895:1899,
1/54/2077:2078,
1/54/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_6T59_026No text annotation
J3_6T59_015No text annotation
J5_6T59_001No text annotation

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