HL_6T59_008

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6T59|1|54|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_008 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.3113

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6T59|1|54|U|204
6T59|1|54|C|205
6T59|1|54|U|206
6T59|1|54|G|207
6T59|1|54|A|208
6T59|1|54|U|209
6T59|1|54|C|210
6T59|1|54|G|211

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain TT

Tetratricopeptide repeat protein 5

Chain Y3

Ribosomal protein L26

Chain e3

eL32