HL_6T59_012

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

6T59|1|54|G|315

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_012 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.2488

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6T59|1|54|G|314
6T59|1|54|G|315
6T59|1|54|U|316
6T59|1|54|A|317
6T59|1|54|A|318
6T59|1|54|A|319
6T59|1|54|C|320
6T59|1|54|U|321
6T59|1|54|C|322
6T59|1|54|C|323

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain i3

60S ribosomal protein L36

Chain o3

eL42