HL_6T59_014

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_014 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.125

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T59|1|54|U|393
6T59|1|54|G|394
6T59|1|54|A|395
6T59|1|54|A|396
6T59|1|54|G|397
6T59|1|54|A|398

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 1

Tubulin Beta

Chain NA

Nascent polypeptide-associated complex subunit alpha

Chain P3

uL22