3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CCUUCCAGUCCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T59_024 not in the Motif Atlas
Geometric match to HL_4ENC_001
Geometric discrepancy: 0.3496
The information below is about HL_4ENC_001
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_77600.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

6T59|1|54|C|1436
6T59|1|54|C|1437
6T59|1|54|U|1438
6T59|1|54|U|1440
6T59|1|54|C|1441
6T59|1|54|C|1442
6T59|1|54|A|1443
6T59|1|54|G|1444
6T59|1|54|U|1445
6T59|1|54|C|1446
6T59|1|54|C|1447
6T59|1|54|G|1448

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain C3
uL4
Chain F3
Ul30
Chain Q3
eL18
Chain b3
eL29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0921 s