HL_6T59_030

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6T59|1|54|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_030 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.5721

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T59|1|54|C|1763
6T59|1|54|G|1764
6T59|1|54|A|1765
6T59|1|54|A|1766
6T59|1|54|A|1767
6T59|1|54|C|1768
6T59|1|54|G|1769

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain J3

Ribosomal protein L11