HL_6T59_035

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

6T59|1|54|C|2094, 6T59|1|54|U|2267, 6T59|1|54|C|2269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T59|1|54|C|2087
6T59|1|54|A|2088
6T59|1|54|G|2089
6T59|1|54|U|2090
6T59|1|54|C|2091
6T59|1|54|G|2092
6T59|1|54|G|2093
6T59|1|54|C|2094
6T59|1|54|A|2095
6T59|1|54|G|2096
6T59|1|54|A|2097
6T59|1|54|G|2098
6T59|1|54|C|2099
6T59|1|54|G|2100
6T59|1|54|A|2101
6T59|1|54|G|2102
6T59|1|54|A|2103
6T59|1|54|A|2104
6T59|1|54|A|2105
6T59|1|54|G|2106
6T59|1|54|A|2107
6T59|1|54|G|2108
6T59|1|54|A|2109
6T59|1|54|G|2110
6T59|1|54|U|2111
6T59|1|54|G|2112
6T59|1|54|G|2113
6T59|1|54|C|2258
6T59|1|54|G|2259
6T59|1|54|C|2260
6T59|1|54|G|2261
6T59|1|54|G|2262
6T59|1|54|A|2263
6T59|1|54|C|2264
6T59|1|54|G|2265
6T59|1|54|C|2266
6T59|1|54|U|2267
6T59|1|54|A|2268
6T59|1|54|C|2269
6T59|1|54|G|2270

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

Ul30

Chain Q3

eL18

Chain b3

eL29

Chain e3

eL32

Chain r3

eL28