3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
ACGAGAACU
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T59_037 not in the Motif Atlas
Homologous match to HL_8C3A_031
Geometric discrepancy: 0.158
The information below is about HL_8C3A_031
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6T59|1|54|A|2376
6T59|1|54|C|2377
6T59|1|54|G|2378
6T59|1|54|A|2379
6T59|1|54|G|2380
6T59|1|54|A|2381
6T59|1|54|A|2382
6T59|1|54|C|2383
6T59|1|54|U|2384

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain NA
Nascent polypeptide-associated complex subunit alpha
Chain P3
uL22
Chain R3
eL19
Chain d3
eL31

Coloring options:


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