HL_6T59_038

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6T59|1|54|G|2421, 6T59|1|54|U|2425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_038 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1792

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6T59|1|54|A|2420
6T59|1|54|G|2421
6T59|1|54|C|2422
6T59|1|54|A|2423
6T59|1|54|G|2424
6T59|1|54|U|2425
6T59|1|54|U|2426

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain l3

eL39