HL_6T59_041

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6T59|1|54|U|2530, 6T59|1|54|C|2531

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_041 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1253

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6T59|1|54|G|2523
6T59|1|54|U|2524
6T59|1|54|U|2525
6T59|1|54|C|2526
6T59|1|54|A|2527
6T59|1|54|G|2528
6T59|1|54|A|2529
6T59|1|54|U|2530
6T59|1|54|C|2531
6T59|1|54|C|2532

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain X3

uL23

Chain g3

eL34