HL_6T59_054

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6T59|1|54|C|3673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_054 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.1805

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T59|1|54|C|3668
6T59|1|54|G|3669
6T59|1|54|C|3670
6T59|1|54|G|3671
6T59|1|54|G|3672
6T59|1|54|C|3673
6T59|1|54|G|3674

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain G3

eL8

Chain N3

Ribosomal protein L15