HL_6T59_058

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6T59|1|54|A|3876, 6T59|1|54|A|3877, 6T59|1|54|C|3878

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_058 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0911

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6T59|1|54|G|3873
6T59|1|54|G|3874
6T59|1|54|G|3875
6T59|1|54|A|3876
6T59|1|54|A|3877
6T59|1|54|C|3878
6T59|1|54|G|3879
6T59|1|54|G|3880
6T59|1|54|G|3881
6T59|1|54|C|3882

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain e3

eL32