HL_6T59_073

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6T59|1|54|G|4694, 6T59|1|54|C|4698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0721

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6T59|1|54|C|4688
6T59|1|54|U|4689
6T59|1|54|G|4690
6T59|1|54|A|4691
6T59|1|54|A|4692
6T59|1|54|C|4693
6T59|1|54|G|4694
6T59|1|54|C|4695
6T59|1|54|C|4696
6T59|1|54|U|4697
6T59|1|54|C|4698
6T59|1|54|U|4699
6T59|1|54|A|4700
6T59|1|54|A|4701
6T59|1|54|G|4702

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13

Chain m3

eL40