HL_6T59_076

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6T59|1|54|U|4976

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T59_076 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1279

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6T59|1|54|G|4975
6T59|1|54|U|4976
6T59|1|54|A|4977
6T59|1|54|G|4978
6T59|1|54|A|4979
6T59|1|54|C|4980
6T59|1|54|G|4981
6T59|1|54|A|4982
6T59|1|54|C|4983

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22