HL_6T7I_004

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACGGCUAUC

Length

12 nucleotides

Bulged bases

6T7I|1|7|C|16, 6T7I|1|7|G|17, 6T7I|1|7|G|18, 6T7I|1|7|C|19, 6T7I|1|7|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_004 not in the Motif Atlas

Geometric match to HL_4JXZ_001

Geometric discrepancy: 0.3361

The information below is about HL_4JXZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.2

Basepair signature

cWW-cWS-tHS-F

Number of instances in this motif group

7

Unit IDs

6T7I|1|7|G|12
6T7I|1|7|U|13
6T7I|1|7|A|14
6T7I|1|7|A|15
6T7I|1|7|C|16
6T7I|1|7|G|17
6T7I|1|7|G|18
6T7I|1|7|C|19
6T7I|1|7|U|20
6T7I|1|7|A|21
6T7I|1|7|U|22
6T7I|1|7|C|23

Current chains

Chain 7

tRNA (E-site)

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A