HL_6T7I_051

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_051 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3196

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6T7I|1|C1|G|1952
6T7I|1|C1|G|1953
6T7I|1|C1|G|1954
6T7I|1|C1|U|1955
6T7I|1|C1|A|2093
6T7I|1|C1|C|2094

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A