HL_6T7I_058

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6T7I|1|C1|A|2372, 6T7I|1|C1|A|2373, 6T7I|1|C1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_058 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0755

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6T7I|1|C1|G|2369
6T7I|1|C1|G|2370
6T7I|1|C1|G|2371
6T7I|1|C1|A|2372
6T7I|1|C1|A|2373
6T7I|1|C1|C|2374
6T7I|1|C1|G|2375
6T7I|1|C1|G|2376
6T7I|1|C1|G|2377
6T7I|1|C1|C|2378

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32