HL_6T7I_059

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCUAC

Length

6 nucleotides

Bulged bases

6T7I|1|C1|G|2452

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_059 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3968

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6T7I|1|C1|G|2451
6T7I|1|C1|G|2452
6T7I|1|C1|C|2492
6T7I|1|C1|U|2493
6T7I|1|C1|A|2494
6T7I|1|C1|C|2495

Current chains

Chain C1

25S ribosomal RNA

Nearby chains