HL_6T7I_082

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6T7I|1|C2|U|158, 6T7I|1|C2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_082 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2666

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7I|1|C2|G|154
6T7I|1|C2|U|155
6T7I|1|C2|A|156
6T7I|1|C2|A|157
6T7I|1|C2|U|158
6T7I|1|C2|U|159
6T7I|1|C2|C|160

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A