HL_6T7I_083

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6T7I|1|C2|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_083 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.392

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6T7I|1|C2|C|190
6T7I|1|C2|C|191
6T7I|1|C2|U|192
6T7I|1|C2|U|193
6T7I|1|C2|U|194
6T7I|1|C2|G|195

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8-A