HL_6T7I_091

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6T7I|1|C2|A|452, 6T7I|1|C2|U|454, 6T7I|1|C2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_091 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3126

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6T7I|1|C2|U|450
6T7I|1|C2|A|451
6T7I|1|C2|A|452
6T7I|1|C2|U|453
6T7I|1|C2|U|454
6T7I|1|C2|C|455
6T7I|1|C2|A|456

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SY

40S ribosomal protein S24-A