HL_6T7I_115

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCGGGGCAACUCCAU*C

Length

18 nucleotides

Bulged bases

6T7I|1|C2|G|1696, 6T7I|1|C2|G|1697, 6T7I|1|C2|G|1698, 6T7I|1|C2|G|1699, 6T7I|1|C2|C|1700, 6T7I|1|C2|A|1701, 6T7I|1|C2|A|1702, 6T7I|1|C2|C|1703, 6T7I|1|C2|U|1704, 6T7I|1|C2|C|1705, 6T7I|1|C2|C|1706, 6T7I|1|C2|A|1707

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_115 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1236

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6T7I|1|C2|G|1692
6T7I|1|C2|A|1693
6T7I|1|C2|U|1708
6T7I|1|C2|C|1709
6T7I|1|C2|G|1696
6T7I|1|C2|G|1697
6T7I|1|C2|G|1698
6T7I|1|C2|G|1699
6T7I|1|C2|C|1700
6T7I|1|C2|A|1701
6T7I|1|C2|A|1702
6T7I|1|C2|C|1703
6T7I|1|C2|U|1704
6T7I|1|C2|C|1705
6T7I|1|C2|C|1706
6T7I|1|C2|A|1707
6T7I|1|C2|U|1708
*
6T7I|1|C2|C|1709

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24-B