HL_6T7I_116

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_116 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.1966

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7I|1|C2|G|1778
6T7I|1|C2|U|1779
6T7I|1|C2|G|1780
6T7I|1|C2|A|1781
6T7I|1|C2|A|1782
6T7I|1|C2|C|1783

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41-B