HL_6T7I_124

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6T7I|1|C1|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_124 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.2112

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6T7I|1|C1|C|1023
6T7I|1|C1|G|1024
6T7I|1|C1|A|1025
6T7I|1|C1|A|1026
6T7I|1|C1|A|1027
6T7I|1|C1|U|1028
6T7I|1|C1|G|1029

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LJ

60S ribosomal protein L11-A

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A