HL_6T7T_020

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6T7T|1|C1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_020 not in the Motif Atlas

Geometric match to HL_5TBW_014

Geometric discrepancy: 0.1012

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6T7T|1|C1|U|640
6T7T|1|C1|C|641
6T7T|1|C1|U|642
6T7T|1|C1|U|643
6T7T|1|C1|G|644
6T7T|1|C1|A|645
6T7T|1|C1|A|646
6T7T|1|C1|A|647
6T7T|1|C1|C|648
6T7T|1|C1|A|649

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L28

Chain Le

60S ribosomal protein L32