HL_6T7T_028

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6T7T|1|C1|C|959, 6T7T|1|C1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_028 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2558

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6T7T|1|C1|C|958
6T7T|1|C1|C|959
6T7T|1|C1|U|960
6T7T|1|C1|C|961
6T7T|1|C1|A|962
6T7T|1|C1|G|963

Current chains

Chain C1

25S rRNA

Nearby chains

Chain La

60S ribosomal protein L28

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L42-A