HL_6T7T_037

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_037 not in the Motif Atlas

Geometric match to HL_5TBW_031

Geometric discrepancy: 0.1428

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6T7T|1|C1|A|1462
6T7T|1|C1|U|1463
6T7T|1|C1|G|1464
6T7T|1|C1|A|1465
6T7T|1|C1|G|1466
6T7T|1|C1|A|1467
6T7T|1|C1|A|1468
6T7T|1|C1|C|1469
6T7T|1|C1|U|1470

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ld

60S ribosomal protein L31-A