HL_6T7T_043

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6T7T|1|C1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_043 not in the Motif Atlas

Geometric match to HL_5TBW_037

Geometric discrepancy: 0.1343

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6T7T|1|C1|G|1680
6T7T|1|C1|U|1681
6T7T|1|C1|U|1682
6T7T|1|C1|A|1683
6T7T|1|C1|U|1684
6T7T|1|C1|C|1685
6T7T|1|C1|U|1686
6T7T|1|C1|U|1687
6T7T|1|C1|U|1688

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LU

60S ribosomal protein L22-A