HL_6T7T_053

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

6T7T|1|C1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_053 not in the Motif Atlas

Geometric match to HL_5TBW_047

Geometric discrepancy: 0.129

The information below is about HL_5TBW_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7T|1|C1|A|2164
6T7T|1|C1|G|2165
6T7T|1|C1|A|2166
6T7T|1|C1|A|2167
6T7T|1|C1|A|2168
6T7T|1|C1|G|2169
6T7T|1|C1|U|2170

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LG

60S ribosomal protein L8-A

Chain LN

60S ribosomal protein L15-A