HL_6T7T_055

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6T7T|1|C1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_055 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1227

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6T7T|1|C1|G|2253
6T7T|1|C1|U|2254
6T7T|1|C1|A|2255
6T7T|1|C1|A|2256
6T7T|1|C1|C|2257
6T7T|1|C1|U|2258
6T7T|1|C1|A|2259
6T7T|1|C1|U|2260
6T7T|1|C1|G|2261
6T7T|1|C1|A|2262
6T7T|1|C1|C|2263

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain C2

Small subunit ribosomal RNA; SSU rRNA