HL_6T7T_057

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6T7T|1|C1|A|2372, 6T7T|1|C1|A|2373, 6T7T|1|C1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_057 not in the Motif Atlas

Geometric match to HL_5TBW_051

Geometric discrepancy: 0.0818

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6T7T|1|C1|G|2369
6T7T|1|C1|G|2370
6T7T|1|C1|G|2371
6T7T|1|C1|A|2372
6T7T|1|C1|A|2373
6T7T|1|C1|C|2374
6T7T|1|C1|G|2375
6T7T|1|C1|G|2376
6T7T|1|C1|G|2377
6T7T|1|C1|C|2378

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32