HL_6T7T_062

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

6T7T|1|C1|A|2637, 6T7T|1|C1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_062 not in the Motif Atlas

Geometric match to HL_5TBW_055

Geometric discrepancy: 0.1023

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6T7T|1|C1|U|2633
6T7T|1|C1|U|2634
6T7T|1|C1|A|2635
6T7T|1|C1|A|2636
6T7T|1|C1|A|2637
6T7T|1|C1|C|2638
6T7T|1|C1|G|2639
6T7T|1|C1|A|2640
6T7T|1|C1|U|2641
6T7T|1|C1|A|2642
6T7T|1|C1|A|2643
6T7T|1|C1|C|2644
6T7T|1|C1|G|2645

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29