HL_6T7T_068

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_068 not in the Motif Atlas

Geometric match to HL_5TBW_061

Geometric discrepancy: 0.1314

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6T7T|1|C1|C|2840
6T7T|1|C1|G|2841
6T7T|1|C1|U|2842
6T7T|1|C1|U|2843
6T7T|1|C1|C|2844
6T7T|1|C1|A|2845
6T7T|1|C1|U|2846
6T7T|1|C1|A|2847
6T7T|1|C1|G|2848

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

Ubiquitin-60S ribosomal protein L40