3D structure

PDB id
6T7T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
6T7T|1|C1|G|3116, 6T7T|1|C1|C|3120
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T7T_074 not in the Motif Atlas
Geometric match to HL_5TBW_067
Geometric discrepancy: 0.0899
The information below is about HL_5TBW_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.9
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6T7T|1|C1|C|3110
6T7T|1|C1|U|3111
6T7T|1|C1|G|3112
6T7T|1|C1|A|3113
6T7T|1|C1|A|3114
6T7T|1|C1|C|3115
6T7T|1|C1|G|3116
6T7T|1|C1|C|3117
6T7T|1|C1|C|3118
6T7T|1|C1|U|3119
6T7T|1|C1|C|3120
6T7T|1|C1|U|3121
6T7T|1|C1|A|3122
6T7T|1|C1|A|3123
6T7T|1|C1|G|3124

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LH
60S ribosomal protein L9-A
Chain LO
60S ribosomal protein L16-A
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


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