HL_6T7T_074

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6T7T|1|C1|G|3116, 6T7T|1|C1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_074 not in the Motif Atlas

Geometric match to HL_5TBW_067

Geometric discrepancy: 0.0899

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6T7T|1|C1|C|3110
6T7T|1|C1|U|3111
6T7T|1|C1|G|3112
6T7T|1|C1|A|3113
6T7T|1|C1|A|3114
6T7T|1|C1|C|3115
6T7T|1|C1|G|3116
6T7T|1|C1|C|3117
6T7T|1|C1|C|3118
6T7T|1|C1|U|3119
6T7T|1|C1|C|3120
6T7T|1|C1|U|3121
6T7T|1|C1|A|3122
6T7T|1|C1|A|3123
6T7T|1|C1|G|3124

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L16-A

Chain Lm

Ubiquitin-60S ribosomal protein L40