HL_6T7T_078

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

6T7T|1|C1|U|3351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_078 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2662

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6T7T|1|C1|C|3349
6T7T|1|C1|C|3350
6T7T|1|C1|U|3351
6T7T|1|C1|U|3352
6T7T|1|C1|G|3353

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LU

60S ribosomal protein L22-A

Chain SI

40S ribosomal protein S8