HL_6T7T_082

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6T7T|1|C2|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_082 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3852

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6T7T|1|C2|C|190
6T7T|1|C2|C|191
6T7T|1|C2|U|192
6T7T|1|C2|U|193
6T7T|1|C2|U|194
6T7T|1|C2|G|195

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8