HL_6T7T_093

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_093 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1118

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7T|1|C2|C|569
6T7T|1|C2|A|570
6T7T|1|C2|G|571
6T7T|1|C2|C|572
6T7T|1|C2|C|573
6T7T|1|C2|G|574

Current chains

Chain C2

18S rRNA

Nearby chains

Chain 5

mRNA

Chain SX

40S ribosomal protein S23-A