HL_6T7T_102

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_102 not in the Motif Atlas

Geometric match to HL_4V88_210

Geometric discrepancy: 0.0839

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7T|1|C2|A|1084
6T7T|1|C2|G|1085
6T7T|1|C2|A|1086
6T7T|1|C2|A|1087
6T7T|1|C2|A|1088
6T7T|1|C2|U|1089

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SW

40S ribosomal protein S22-A

Chain Sa

40S ribosomal protein S26-B