HL_6T7T_110

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_110 not in the Motif Atlas

Geometric match to HL_6CB3_004

Geometric discrepancy: 0.1263

The information below is about HL_6CB3_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6T7T|1|C2|C|1501
6T7T|1|C2|G|1502
6T7T|1|C2|A|1503
6T7T|1|C2|G|1504
6T7T|1|C2|A|1505
6T7T|1|C2|G|1506

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A

Chain ST

40S ribosomal protein S19-A