HL_6T7T_119

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_119 not in the Motif Atlas

Homologous match to HL_5TBW_186

Geometric discrepancy: 0.1167

The information below is about HL_5TBW_186

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7T|1|C4|G|88
6T7T|1|C4|G|89
6T7T|1|C4|U|90
6T7T|1|C4|G|91
6T7T|1|C4|A|92
6T7T|1|C4|C|93

Current chains

Chain C4

5S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LF

60S ribosomal protein L7-A

Chain LI

60S ribosomal protein L10

Chain LS

60S ribosomal protein L20-A