HL_6T83_007

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

6T83|1|1b|G|218, 6T83|1|1b|A|219, 6T83|1|1b|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1385

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6T83|1|1b|G|216
6T83|1|1b|U|217
6T83|1|1b|G|218
6T83|1|1b|A|219
6T83|1|1b|G|220
6T83|1|1b|A|221
6T83|1|1b|A|222
6T83|1|1b|U|223
6T83|1|1b|C|224

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 3b

5.8S ribosomal RNA; 5.8S rRNA

Chain Cy

60S ribosomal protein L4-A

Chain Yy

60S ribosomal protein L26-A