HL_6T83_021

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6T83|1|1b|A|913, 6T83|1|1b|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1182

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6T83|1|1b|G|910
6T83|1|1b|C|911
6T83|1|1b|G|912
6T83|1|1b|A|913
6T83|1|1b|A|914
6T83|1|1b|A|915
6T83|1|1b|G|916
6T83|1|1b|A|917
6T83|1|1b|C|918

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ay

60S ribosomal protein L2-A

Chain Ny

60S ribosomal protein L15-A

Chain jb

60S ribosomal protein L37-A