HL_6T83_075

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6T83|1|2b|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_075 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1797

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T83|1|2b|G|154
6T83|1|2b|U|155
6T83|1|2b|A|156
6T83|1|2b|A|157
6T83|1|2b|U|158
6T83|1|2b|U|159
6T83|1|2b|C|160

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Gb

40S ribosomal protein S6-A

Chain Yb

40S ribosomal protein S24-A