HL_6T83_095

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

6T83|1|2b|U|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_095 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.3734

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6T83|1|2b|U|1055
6T83|1|2b|U|1056
6T83|1|2b|U|1057
6T83|1|2b|U|1058
6T83|1|2b|U|1059
6T83|1|2b|U|1060
6T83|1|2b|A|1061
6T83|1|2b|A|1062
6T83|1|2b|U|1063
6T83|1|2b|G|1064

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Ba

40S ribosomal protein S1-A

Chain bb

40S ribosomal protein S27-A