HL_6T83_108

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_108 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.1935

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T83|1|2b|G|1778
6T83|1|2b|U|1779
6T83|1|2b|G|1780
6T83|1|2b|A|1781
6T83|1|2b|A|1782
6T83|1|2b|C|1783

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain 1b

Large subunit ribosomal RNA; LSU rRNA

Chain nb

60S ribosomal protein L41-A