HL_6T83_109
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T83_109 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.2692
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6T83|1|3b|C|47
6T83|1|3b|A|48
6T83|1|3b|G|49
6T83|1|3b|C|50
6T83|1|3b|G|51
6T83|1|3b|A|52
6T83|1|3b|A|53
6T83|1|3b|A|54
6T83|1|3b|U|55
6T83|1|3b|G|56
Current chains
- Chain 3b
- 5.8S rRNA
Nearby chains
- Chain 1b
- Large subunit ribosomal RNA; LSU rRNA
- Chain Xy
- 60S ribosomal protein L25
- Chain hb
- 60S ribosomal protein L35-A
- Chain jb
- 60S ribosomal protein L37-A
- Chain lb
- 60S ribosomal protein L39
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